With the ever-increasing number of quantitative susceptibility mapping (QSM) methods and research applications, it becomes difficult for application-driven researchers to choose a (best) QSM method or pipeline for their study. Here, we present a susceptibility mapping pipeline tool for phase images (SEPIA) which includes a user interface for non-experienced users and the possibility of generating code that can be used for scripting large studies. SEPIA incorporates various QSM toolboxes available in Matlab as well as a wide range of methods to process MR phase data, including signal phase unwrapping, background field removal and field-to-source inversion.
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