We propose a novel slice-GRAPPA reconstruction algorithm, termed multi-kernel slice-GRAPPA (mks-GRAPPA), to tackle the challenge of reconstructing high spatial resolution segmented multi-shot EPI data for fMRI. This is particularly relevant for the recently proposed Variable-Flip-Angle “FLEET” pulse sequence. For a segmentation factor, S, by training 2×S slice-GRAPPA kernels, rather than one, we demonstrate significant improvements in image quality metrics under a wide range of protocols. The multitude of kernels account for static signal discontinuities within and across segments in multi-shot EPI. In the SNR starved regime of high-res fMRI, mks-GRAPPA allows us to recover a significant portion of lost tSNR.
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