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Abstract #3769

Enhancing Vessel Continuity in Deep Learning based Segmentation using Maximum Intensity Projection as Loss

Soumick Chatterjee1,2,3, Karthikesh Varma Chintalapati1, Chethan Radhakrishna1, Sri Chandana Hudukula Ram Kumar1, Raviteja Sutrave1, Hendrik Mattern3, Oliver Speck3,4,5, and Andreas Nürnberger1,2,5
1Faculty of Computer Science, Otto von Guericke University Magdeburg, Magdeburg, Germany, 2Data and Knowledge Engineering Group, Otto von Guericke University Magdeburg, Magdeburg, Germany, 3Department of Biomedical Magnetic Resonance, Otto von Guericke University Magdeburg, Magdeburg, Germany, 4German Center for Neurodegenerative Disease, Magdeburg, Germany, 5Center for Behavioral Brain Sciences, Magdeburg, Germany

Synopsis

Keywords: Segmentation, Blood vesselsVessel Segmentation with deep learning is a challenging task that involves not only learning high-level feature representations but also the spatial continuity of the features across dimensions. Semi-supervised patch-based approaches have been effective in identifying small vessels of 1-2 voxels in diameter but failed to maintain vessel continuity. This study focuses on improving the segmentation quality by considering the spatial correlation of the features using the maximum intensity projection (MIP) as an additional loss criterion. It was observed that the proposed method quantitatively improves the segmentation while also improving vessel continuity, as evident in the visual examinations of ROIs.

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