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Abstract #1235

Physics-informed and uncertainty-aware deep learning approach for liver PDFF quantification

Juan Pablo Meneses1,2, Cristobal Arrieta2,3, Pablo Irarrazaval1,2,4,5, Marcelo Andia1,2,6, Carlos Sing Long1,2,4,7, Juan Cristobal Gana8, Jose Eduardo Galgani9,10, Cristian Tejos1,2,5, and Sergio Uribe2,11
1Biomedical Imaging Center, Pontificia Universidad Catolica de Chile, Santiago, Chile, 2i-Health Millennium Institute for Intelligent Healthcare Engineering, Santiago, Chile, 3Faculty of Engineering, Universidad Alberto Hurtado, Santiago, Chile, 4Institute for Biological and Medical Engineering, Pontificia Universidad Catolica de Chile, Santiago, Chile, 5Department of Electrical Engineering, Pontificia Universidad Catolica de Chile, Santiago, Chile, 6Radiology Department, School of Medicine, Pontificia Universidad Catolica de Chile, Santiago, Chile, 7Institute for Mathematical & Computational Engineering, Pontificia Universidad Catolica de Chile, Santiago, Chile, 8Pediatric Gastroenterology and Nutrition Department, Division of Pediatrics, School of Medicine, Pontificia Universidad Catolica de Chile, Santiago, Chile, 9Nutrition & Dietetics. Department of Health Sciences; Faculty of Medicine, Pontificia Universidad Catolica de Chile, Santiago, Chile, 10Department of Nutrition, Diabetes and Metabolism. Faculty of Medicine, Pontificia Universidad Catolica de Chile, Santiago, Chile, 11Department of Medical Imaging and Radiation Sciences, Monash University, Melbourne, VIC, Australia

Synopsis

Keywords: Analysis/Processing, Fat, Proton Density Fat Fraction

Motivation: Most Deep Learning (DL) methods to estimate liver PDFF require reference results for training and can only calculate deterministic outputs with unknown uncertainty.

Goal(s): To estimate liver PDFF using a fully-unsupervised DL method for MR water-fat separation capable of quantifying uncertainty.

Approach: We propose a physics informed DL-based framework which can be trained purely on chemical shift-encoded MR images. Our method estimates stochastic R2* and Δf maps, enabling uncertainty quantification, which are then used to obtain stochastic water-only and fat-only components.

Results: Liver PDFF estimations showed good agreement with a reference technique, and uncertainty maps associated with imperfections in the considered physical model.

Impact: The proposed physics-informed DL model requires only MR data for training, which facilitates the data gathering process. Moreover, our uncertainty-aware approach can quantify the uncertainty associated to the final estimations, which may be of significant value in clinical practice.

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Keywords