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Abstract #2124

MRF-Synth: An Image Generation Framework for Learning Contrast-Invariant Brain Segmentation

Richard James Adams1, Walter Zhao1, Jessie E.P. Sun2, Siyuan Hu1, Dan Ma1, and Pew-Thian Yap3
1Biomedical Engineering, Case Western Reserve University, Cleveland, OH, United States, 2Radiology, Case Western Reserve University, Cleveland, OH, United States, 3Radiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States

Synopsis

Keywords: Segmentation, Brain, Magnetic Resonance Fingerprinting, Contrast-Invariant, Age-Agnostic

Motivation: Intensity-based brain segmentation methods face challenges with generalizability, as they are susceptible to site, age, and contrast variations.

Goal(s): Develop an efficient, unified framework to train segmentation networks that are insensitive to contrast variations.

Approach: MRF sequences encode image time series that include both common and uncommon contrasts. We develop MRF-Synth, a framework to generate contrasts from MRF quantitative maps for training and evaluating contrast-invariant networks.

Results: We show that a segmentation U-Net trained with MRF-Synth yields highly consistent results across contrasts, vendors, and ages (DICE > 0.86 in adults).

Impact: MRF-Synth represents an efficient, generalizable framework for developing and evaluating contrast-invariant segmentation networks. We demonstrate the utility of MRF-Synth in training a U-Net to segment healthy MR brain images into 18 anatomical regions regardless of contrast, scanner, vendor, or age.

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