We investigated the effect of brain tissue fixation on iron concentration and on quantitative maps of the magnetic susceptibility and effective transverse relaxation rate (R2*). Both R2* and susceptibility distributions of unfixed and fixed tissue were found to be similar, indicating similar underlying proportions of iron across tissues. Quantitatively, however, severe decreases of iron concentration of 25% in putamen and about 15% in white matter were measured after tissue fixation. The iron concentration change due to tissue fixation was captured by R2* and susceptibility which needs to be considered when directly comparing experiments performed with unfixed and fixed brain tissue.
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