As of yet J-difference editing methods such as MEGA-PRESS have not been applied to in vivo mouse studies due to low sensitivity and the lack of an automated program to analyze the data. To overcome the obstacles, a fully automated software toolkit MRSMouse was developed for the quantitative analysis of MEGA-PRESS data of the mouse brain. With MRSMouse, we demonstrated the feasibility and reproducibility of MEGA-PRESS for detection of GABA in the mouse brain using a Bruker BioSpec 94/20 9.4T system. During anesthesia, significant decreases of mouse thalamic GABA levels caused by isoflurane were noticed in vivo for the first time.
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