2D Correlation Spectroscopy (COSY) can be used to identify and study coupled resonances that cannot be observed or distinguished in 1D NMR spectra. However, resources and literature on best practices for processing raw 2D COSY data are limited. In this work, we describe a novel pipeline of signal processing algorithms and visualizations for quality assessment and artifact mitigation designed specifically for raw 2D COSY data, including detection of residual H2O and lipid contamination, correction for drift across averages, and peak location correction to enable more accurate comparisons of metabolites across subjects.
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