Multiple sclerosis (MS) lesions are well known to alter tissue segmentation, shifting tissue boundaries between grey and white matter regions (GM and WM). Despite evidence of these errors occurring when working with anatomical images, little is known about the possible effects of MS lesions on the functional MRI results. Here, we addressed this question by simulating the presence of MS lesions on resting state functional MRI data from healthy controls. Subsequently, we tested whether lesion filling functional MRI data is useful to prevent artefactual results of functional connectivity alterations that are actually due to MS lesions.
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