Short-TR BOLD fMRI studies have increased in popularity due to the advancement of simultaneous multi-slice (SMS) techniques and the many advantages afforded by rapid sampling. However, in rapid imaging of a single slice, disruptions to the steady-state from physiological sources can result in large temporal variability in long-T2 tissues, primarily around cerebrospinal fluid. We investigated the sources of this variability and how they translate from single-slice to whole-brain SMS-based fMRI.
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