Tractography involves complicated processing and connectomics include even more complexity. To facilitate structural connectome reconstruction we present: Connectoflow. Connectoflow requires simple inputs, has simple options and provides simple outputs, all with cutting-edge processing. By leveraging the simplicity of Nextflow and Docker/Singularity, Connectoflow is robust and efficient. By combining Tractoflow with Connectoflow, one can go from raw DW-images to structural connectomes in a few simplified steps. The proposed pipeline innovates by including connection-wise cleaning/filtering, provides connection weights that go beyond streamline count (COMMIT) as well as advanced connection-wise metrics (similarity and AFD).
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