We investigated the relationship between diffusion model biomarkers and inflammatory cells, as measured by HLA-DR and CD68 histological staining for activated microglia and macrophages, after human traumatic spinal cord injury. Fractional anisotropy decreases and radial and mean diffusivity increases were strongly correlated with the presence of activated microglia and macrophages. ActiveAx-derived intra-cellular volume fraction and axon density decreased while axon diameter increased. Fiber fraction from Diffusion Basis Spectrum Imaging decreased and while hindered fraction increased in the presence of inflammation.
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