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Abstract #3898

Brain age pre-training for prediction of Alzheimer’s disease diagnosis and mild cognitive impairment progression

Kim-Ngan Nguyen1,2, Trevor Wei Kiat Tan1,2,3,4,5, Chen Zhang1,2,4,5, Ru Kong1,2,4,5, Susan F Cheng1,2,3,4, Fang Ji1,2, Joanna Su Xian Chong1,2, Eddie Jun Yi Chong6,7, Narayanaswamy Venketasubramanian8, Christopher Chen6,7,9, Juan Helen Zhou1,2,3,4, and B. T. Thomas Yeo1,2,3,4,5
1Centre for Sleep and Cognition, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore, 2Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore, 3Integrative Sciences and Engineering Programme (ISEP), National University of Singapore, Singapore, Singapore, 4Department of Electrical and Computer Engineering, National University of Singapore, Singapore, Singapore, 5N.1 Institute for Health & Institute for Digital Medicine (WisDM), National University of Singapore, Singapore, Singapore, 6Memory, Aging and Cognition Centre, National University Health System, Singapore, Singapore, 7Department of Psychological Medicine, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore, 8Raffles Neuroscience Centre, Raffles Hospital, Singapore, Singapore, 9Department of Pharmacology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore

Synopsis

Keywords: Alzheimer's Disease, Brain, transfer learning, pretrain, AD diagnosis, MCI progression, stable progressive MCI

Motivation: Literature suggests large multisite brain age pre-trained models (indirect models) hold significant promise for downstream prediction on small clinical samples via transfer learning.

Goal(s): Our goal was to determine if such indirect models indeed outperform models trained-from-scratch (direct models), across varying training and validation set sizes, on two clinical prediction tasks: Alzheimer’s disease (AD) diagnosis, and mild cognitive impairment (MCI) progression.

Approach: State-of-the-art brain age model pre-trained on n=53,542 diverse dataset was used as initialization for indirect models.

Results: For AD Diagnosis, Direct model significantly outperformed feature extracted indirect model starting from 400 training and validation samples or more.

Impact: The 400-training-and-validation-samples threshold encourages clinical institutions with limited computing resources and small sample sizes (n<400) to feature extract the brain age pre-trained model instead of training from scratch, potentially lowering healthcare costs and speeding up Alzheimer’s disease diagnosis and prognosis.

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Keywords