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Abstract #4848

Semi-supervised learning for non-invasive radiopathomic mapping of treatment naïve glioma with multi-parametric MRI

Jacob Ellison1,2,3, Nate Tran1,2,3, Paramjot Singh1, Oluwaseun Adegbite1,2,3, Joanna Phillips4,5, Annette Molinaro4, Valentina Pedoia1,2,3, Tracy Luks1, Anny Shai4,5, Devika Nair1, Javier Villanueva-Meyer1,2, Mitchel Berger4, Shawn Hervey-Jumper4, Manish Aghi4, Susan Chang4, and Janine Lupo1,2,3
1Radiology and Biomedical Imaging, UCSF, San Francisco, CA, United States, 2Center for Intelligent Imaging, UCSF, San Francisco, CA, United States, 3Bioengineering, UCSF/UC Berkeley, San Francisco, CA, United States, 4Neurological Surgery, UCSF, San Francisco, CA, United States, 5Pathology, UCSF, San Francisco, CA, United States

Synopsis

Keywords: Diagnosis/Prediction, Machine Learning/Artificial Intelligence

Motivation:Radiopathomic mapping of glioma could improve standard of care by helping guide surgical resection and subsequent treatment. Most current methods for predicting tumor pathology using MRI neglect intra-tumoral heterogeneity.

Goal(s): We aim to use multi-parametric MRI and deep learning to spatially map pathology for treatment naïve glioma.

Approach: We utilized histopathologically analyzed tissue samples taken during surgical resection with known coordinates on pre-surgical multi-parametric MRI and semi-supervised ensemble networks.

Results: Our model classifies Ki-67 with an AUROC of 0.84 and 0.73 for combined Ki-67 and percent cancerous cells. Including physiologic MRI and pretraining on patches of unknown pathology improved performance.

Impact: We performed radiopathomic mapping in patients with newly-diagnosed glioma using presurgical physiological + anatomical MRI and semi-supervised ensemble networks and achieved AUROCs of 0.84 and 0.73 for Ki-67 and combined Ki-67 and % cancerous cells, respectively.

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Keywords